Description

generate a white matter probability mask from the DW images.

syntax:     gen_WM_mask [ options ] dwi mask prob

Arguments

dwi the input diffusion-weighted image.
mask a binary mask of the brain.
prob the output white matter 'probability' image.

Options

-grad encoding specify the diffusion-weighted gradient scheme used in the acquisition. The program will normally attempt to use the encoding stored in image header.
encoding the gradient encoding, supplied as a 4xN text file with each line is in the format [ X Y Z b ], where [ X Y Z ] describe the direction of the applied gradient, and b gives the b-value in units (1000 s/mm^2).
-margin width specify the width of the margin on either side of the image to be used to estimate the noise level (default = 10).
width the width to use.
-info display information messages.
-quiet do not display information messages or progress status.
-debug display debugging messages.
-help display this information page and exit.
-version display version information and exit.