General information

• Overview
• Command-line example
• MRView - the MRtrix viewer
• Coordinate system
• Other features
• Command line usage
• Basic usage
• Command line options
• Standard options
• Number sequences
• Data pipes
• Supported file formats and data types
• Supported image file formats
• DICOM
• NIfTI 1.1 (*.nii)
• Analyse/SPM (*.hdr/*.img)
• MRtrix (*.mif or *.mih)
• XDS (*.hdr/*.bfloat or *.hdr/*.bshort)
• Legacy MRTools (*.mri)
• Supported data types
• Data ordering
• MRView
• Quick reference
• Displaying images
• Accessing images
• Navigating through the image
• Windowing the image
• Displaying multiple images
• Copying the position of the focus into other applications
• Additional tools: the sidebar
• Tractography
• ROI analysis
• Overlay
• Orientation plot
• Screen capture

Donald Tournier
MRtrix version 0.2.12
Last updated 2012-02-10