| -transform transform |
specified the 4x4 transform to apply.
| transform |
the transform to apply, in the form of a 4x4 ascii file. |
|
| -replace |
replace the current transform by that specified, rather than applying it to the current transform. |
| -inverse |
invert the specified transform before using it. |
| -template image |
reslice the input image to match the specified template image.
| image |
the template image. |
|
| -reference image |
in case the transform supplied maps from the input image onto a reference image, use this option to specify the reference. Noe that this implicitly sets the -replace option.
| image |
the reference image. |
|
| -flipx |
assume the transform is supplied assuming a coordinate system with the x-axis reversed relative to the MRtrix convention (i.e. x increases from right to left). This is required to handle transform matrices produced by FSL's FLIRT command. This is only used in conjunction with the -reference option. |
| -upsample factor |
reduce the output voxel size along all 3 axes by the factor specified. This is only used in conjunction with the -template option.
| factor |
the factor by which to upsample. |
|
| -info |
display information messages. |
| -quiet |
do not display information messages or progress status. |
| -debug |
display debugging messages. |
| -help |
display this information page and exit. |
| -version |
display version information and exit. |
