Tractography

• Importing DW data
• The diffusion-weighted images
• Anatomical images
• The diffusion-weighted gradient scheme
• Data pre-processing
• Brain mask
• Diffusion tensor images
• Constrained spherical deconvolution
• White matter mask
• ROI selection
• ROI types
• Defining ROIs
• Performing fibre-tracking
• A simple example using the diffusion tensor
• Using a inclusion ROI
• Using a exclusion ROI
• Using an image as a ROI
• Tracking using spherical deconvolution
• Whole brain tracking
• Track Density Imaging

Donald Tournier
MRtrix version 0.2.12
Last updated 2012-01-04